| Similarity | Rank | |
|---|---|---|
| 190bp | 0.942 | 78053 |
| 55bp | 0.941 | 75412 |
| 300bp | 0.940 | 49216 |
| bglii | 0.935 | 93143 |
| cddp | 0.931 | 97869 |
| 5kb | 0.929 | 67734 |
| n25 | 0.923 | 54520 |
| nf1 | 0.923 | 74179 |
| noti | 0.919 | 99590 |
| vsg | 0.917 | 69244 |
| polylinker | 0.915 | 78296 |
| cytrp | 0.915 | 99373 |
| hindiii | 0.914 | 92999 |
| pacab3 | 0.914 | 66336 |
| e2f-1 | 0.913 | 64450 |
| avaii | 0.913 | 97944 |
| 3kb | 0.913 | 65197 |
| up6 | 0.913 | 75363 |
| puc13 | 0.913 | 93526 |
| 6kb | 0.912 | 69314 |
| prep8 | 0.911 | 76537 |
| pbruc1 | 0.909 | 89329 |
| nd4 | 0.909 | 81357 |
| cys | 0.908 | 76282 |
| smai | 0.908 | 93140 |