| Similarity | Rank | |
|---|---|---|
| 300bp | 0.963 | 49216 |
| 190bp | 0.961 | 78053 |
| vsg | 0.952 | 69244 |
| hnf-l | 0.948 | 75437 |
| cytrp | 0.944 | 99373 |
| cddp | 0.944 | 97869 |
| 2300bp | 0.941 | 92197 |
| visceral-specific | 0.939 | 70997 |
| pnipenv | 0.939 | 74951 |
| co-transfected | 0.938 | 92161 |
| nf1 | 0.938 | 74179 |
| vzv | 0.937 | 35008 |
| 5kb | 0.936 | 67734 |
| bgli-naei | 0.936 | 98078 |
| bglii | 0.936 | 93143 |
| e2a | 0.935 | 83608 |
| thy-1 | 0.934 | 71654 |
| prep8 | 0.934 | 76537 |
| rag-1 | 0.934 | 54912 |
| oct-2 | 0.934 | 35687 |
| cl100 | 0.934 | 41513 |
| i9x | 0.934 | 65189 |
| x-box | 0.934 | 54718 |
| up6 | 0.933 | 75363 |
| homodimer | 0.932 | 74842 |