| Similarity | Rank | |
|---|---|---|
| aaaaa | 0.927 | 89989 |
| gh5 | 0.903 | 31500 |
| parallel-stranded | 0.899 | 87426 |
| cd2 | 0.885 | 35303 |
| breakpoint | 0.884 | 58722 |
| hox | 0.879 | 51642 |
| arg17 | 0.878 | 76630 |
| t-a | 0.873 | 91536 |
| h1 | 0.871 | 26696 |
| cooperativity | 0.869 | 47581 |
| taatgarat | 0.869 | 60211 |
| dxs178 | 0.868 | 87393 |
| circularly | 0.867 | 75053 |
| antiparallel | 0.865 | 48488 |
| krox-20 | 0.864 | 67436 |
| hindbrain | 0.864 | 41429 |
| cytr | 0.863 | 20510 |
| his15 | 0.863 | 67274 |
| &zgr; | 0.863 | 43848 |
| deop2 | 0.862 | 35352 |
| intercalator | 0.861 | 78248 |
| gmsa | 0.859 | 85393 |
| pentamer | 0.859 | 82676 |
| visceral-specific | 0.859 | 70997 |
| fold-back | 0.858 | 87472 |