| Similarity | Rank | |
|---|---|---|
| exothermicity | 0.904 | 71423 |
| intercalator | 0.904 | 78248 |
| intramolecular | 0.902 | 71283 |
| t-a | 0.901 | 91536 |
| scd2 | 0.896 | 42730 |
| main-chain | 0.896 | 71295 |
| supercoiling | 0.894 | 57807 |
| hydrogen-bond | 0.893 | 48544 |
| nk-1r | 0.893 | 78920 |
| 3-fold | 0.893 | 95127 |
| homophilic | 0.893 | 85787 |
| watson-crick | 0.891 | 92298 |
| antisymmetric | 0.891 | 55047 |
| gcn4 | 0.890 | 90045 |
| cooperativity | 0.890 | 47581 |
| covalent | 0.890 | 28446 |
| arg17 | 0.889 | 76630 |
| metj | 0.888 | 84973 |
| dimer | 0.886 | 29608 |
| single-stranded | 0.884 | 69688 |
| 5-fluorocytosine | 0.884 | 76473 |
| d-stem | 0.884 | 73644 |
| translational | 0.884 | 47664 |
| spin-orbit | 0.883 | 83308 |
| thymine | 0.883 | 66570 |